Re: starcluster sge plugin error

From: Wei Tao <no email>
Date: Wed, 30 May 2012 10:57:56 -0400

I figured it out. Turns out I didn't set "DISABLE_QUEUE=True" when I set
"PLUGINS = sge". When I have both properly set in the config file, it
worked fine.

Thanks!

-Wei

On Wed, May 30, 2012 at 10:08 AM, Wei Tao <wei.tao_at_tsibiocomputing.com>wrote:

> Hi,
>
> I tried to use sge plugin for my cluster to disable master as an execution
> host. I edited my starcluster config file according to the online manual.
> When I start the cluster, I got the following error during the start up
> process. Any suggestions how to resolve this? Thanks!
>
>
> >>> Setting up NFS took 0.075 mins
> >>> Configuring passwordless ssh for root
> >>> Configuring passwordless ssh for sgeadmin
> >>> Shutting down threads...
> 20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Configuring SGE...
> >>> Configuring NFS exports path(s):
> /opt/sge6
> >>> Mounting all NFS export path(s) on 6 worker node(s)
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Setting up NFS took 0.018 mins
> >>> Removing previous SGE installation...
> >>> Installing Sun Grid Engine...
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Creating SGE parallel environment 'orte'
> 7/7 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Adding parallel environment 'orte' to queue 'all.q'
> >>> Shutting down threads...
> 20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Running plugin sge
> >>> Configuring SGE...
> >>> Configuring NFS exports path(s):
> /opt/sge6
> >>> Mounting all NFS export path(s) on 6 worker node(s)
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Setting up NFS took 0.018 mins
> >>> Removing previous SGE installation...
> >>> Installing Sun Grid Engine...
> !!! ERROR - command 'cd /opt/sge6 && TERM=rxvt ./inst_sge -m -noremote
> -auto ./ec2_sge.conf' failed with status 1
> 6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Updating SGE parallel environment 'orte'
> 7/7 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Adding parallel environment 'orte' to queue 'all.q'
> >>> Shutting down threads...
> 20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Configuring cluster took 6.185 mins
>
>
> --
> Wei Tao, Ph.D.
> TSI Biocomputing LLC
> 617-564-0934
>
> This e-mail and any files transmitted with it may contain privileged and
> confidential information and are intended solely for the use of the
> individual or entity to which they are addressed. If you are not the
> intended recipient or the person responsible for delivering the e-mail to
> the intended recipient, you are hereby notified that any dissemination or
> copying of this e-mail or any of its attachment(s) is strictly prohibited.
> If you have received this e-mail in error, please immediately notify the
> sending individual or entity by e-mail and permanently delete the original
> e-mail and attachment(s) from your computer system. Thank you for your
> cooperation.
>
>

-- 
Wei Tao, Ph.D.
TSI Biocomputing LLC
617-564-0934
This e-mail and any files transmitted with it may contain privileged and
confidential information and are intended solely for the use of the
individual or entity to which they are addressed. If you are not the
intended recipient or the person responsible for delivering the e-mail to
the intended recipient, you are hereby notified that any dissemination or
copying of this e-mail or any of its attachment(s) is strictly prohibited.
If you have received this e-mail in error, please immediately notify the
sending individual or entity by e-mail and permanently delete the original
e-mail and attachment(s) from your computer system. Thank you for your
cooperation.

Received on Wed May 30 2012 - 10:58:00 EDT