Hi,
I tried to use sge plugin for my cluster to disable master as an execution
host. I edited my starcluster config file according to the online manual.
When I start the cluster, I got the following error during the start up
process. Any suggestions how to resolve this? Thanks!
>>> Setting up NFS took 0.075 mins
>>> Configuring passwordless ssh for root
>>> Configuring passwordless ssh for sgeadmin
>>> Shutting down threads...
20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Configuring SGE...
>>> Configuring NFS exports path(s):
/opt/sge6
>>> Mounting all NFS export path(s) on 6 worker node(s)
6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Setting up NFS took 0.018 mins
>>> Removing previous SGE installation...
>>> Installing Sun Grid Engine...
6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Creating SGE parallel environment 'orte'
7/7 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Adding parallel environment 'orte' to queue 'all.q'
>>> Shutting down threads...
20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Running plugin sge
>>> Configuring SGE...
>>> Configuring NFS exports path(s):
/opt/sge6
>>> Mounting all NFS export path(s) on 6 worker node(s)
6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Setting up NFS took 0.018 mins
>>> Removing previous SGE installation...
>>> Installing Sun Grid Engine...
!!! ERROR - command 'cd /opt/sge6 && TERM=rxvt ./inst_sge -m -noremote
-auto ./ec2_sge.conf' failed with status 1
6/6 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Updating SGE parallel environment 'orte'
7/7 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Adding parallel environment 'orte' to queue 'all.q'
>>> Shutting down threads...
20/20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Configuring cluster took 6.185 mins
--
Wei Tao, Ph.D.
TSI Biocomputing LLC
617-564-0934
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Received on Wed May 30 2012 - 10:08:42 EDT