Hi Folks,
I was starting my tests with some new features of StarCluster using the
0.9999 version of Git when got this error with the MPICH2 plugin that
always worked right..
Any ideas?
>>> Configuring MPICH2 profile
2/2 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
>>> Setting MPICH2 as default MPI on all nodes
2/2 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100%
!!! ERROR - Error occured while running plugin 'mpich2':
!!! ERROR - error occurred in job (id=master): remote command 'source
/etc/profile && update-alternatives --list mpi' failed with status 2:
alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
This may be freely redistributed under the terms of the GNU Public License.
usage: alternatives --install <link> <name> <path> <priority>
[--initscript <service>]
[--slave <link> <name> <path>]*
alternatives --remove <name> <path>
alternatives --auto <name>
alternatives --config <name>
alternatives --display <name>
alternatives --set <name> <path>
common options: --verbose --test --help --usage --version
--altdir <directory> --admindir <directory>
Traceback (most recent call last):
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
line 48, in run
job.run()
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
line 80, in run
r = self.method(self.args, **self.kwargs)
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/plugins/mpich2.py",
line 32, in _update_alternatives
mpi_choices = node.ssh.execute("update-alternatives --list mpi")
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/sshutils.py",
line 578, in execute
msg, command, exit_status, out_str)
RemoteCommandFailed: remote command 'source /etc/profile &&
update-alternatives --list mpi' failed with status 2:
alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
This may be freely redistributed under the terms of the GNU Public License.
usage: alternatives --install <link> <name> <path> <priority>
[--initscript <service>]
[--slave <link> <name> <path>]*
alternatives --remove <name> <path>
alternatives --auto <name>
alternatives --config <name>
alternatives --display <name>
alternatives --set <name> <path>
common options: --verbose --test --help --usage --version
--altdir <directory> --admindir <directory>
error occurred in job (id=node001): remote command 'source /etc/profile &&
update-alternatives --list mpi' failed with status 2:
alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
This may be freely redistributed under the terms of the GNU Public License.
usage: alternatives --install <link> <name> <path> <priority>
[--initscript <service>]
[--slave <link> <name> <path>]*
alternatives --remove <name> <path>
alternatives --auto <name>
alternatives --config <name>
alternatives --display <name>
alternatives --set <name> <path>
common options: --verbose --test --help --usage --version
--altdir <directory> --admindir <directory>
Traceback (most recent call last):
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
line 48, in run
job.run()
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
line 80, in run
r = self.method(self.args, **self.kwargs)
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/plugins/mpich2.py",
line 32, in _update_alternatives
mpi_choices = node.ssh.execute("update-alternatives --list mpi")
File
"/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/sshutils.py",
line 578, in execute
msg, command, exit_status, out_str)
RemoteCommandFailed: remote command 'source /etc/profile &&
update-alternatives --list mpi' failed with status 2:
alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
This may be freely redistributed under the terms of the GNU Public License.
usage: alternatives --install <link> <name> <path> <priority>
[--initscript <service>]
[--slave <link> <name> <path>]*
alternatives --remove <name> <path>
alternatives --auto <name>
alternatives --config <name>
alternatives --display <name>
alternatives --set <name> <path>
common options: --verbose --test --help --usage --version
--altdir <directory> --admindir <directory>
!!! ERROR - Oops! Looks like you've found a bug in StarCluster
!!! ERROR - Crash report written to:
/home/ubuntu/.starcluster/logs/crash-report-9071.txt
!!! ERROR - Please remove any sensitive data from the crash report
!!! ERROR - and submit it to starcluster_at_mit.edu
Received on Wed Dec 11 2013 - 13:24:08 EST