Re: (no subject)

From: John C. Earls <no email>
Date: Wed, 11 Dec 2013 11:15:32 -0800

This is probably unrelated, but I know I had some problems with sshutils on
the dev branch recently. Came down to me not deleting the old starcluster
before I installed the updated dev. sshutils used to be a submodule, now
it is a module. Doesn't look like the same error, but may be an easy fix.

Regards,

John C. Earls

https://plus.google.com/107716712696040682614/about

"The hard is what makes it great"
http://whatshouldwecallgradschool.tumblr.com/post/64595983503/motivation


On Wed, Dec 11, 2013 at 10:24 AM, Sergio Mafra <sergiohmafra_at_gmail.com>wrote:

> Hi Folks,
>
> I was starting my tests with some new features of StarCluster using the
> 0.9999 version of Git when got this error with the MPICH2 plugin that
> always worked right..
>
> Any ideas?
>
> >>> Configuring MPICH2 profile
> 2/2 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> >>> Setting MPICH2 as default MPI on all nodes
> 2/2 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> 100%
> !!! ERROR - Error occured while running plugin 'mpich2':
> !!! ERROR - error occurred in job (id=master): remote command 'source
> /etc/profile && update-alternatives --list mpi' failed with status 2:
> alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
> This may be freely redistributed under the terms of the GNU Public License.
>
> usage: alternatives --install <link> <name> <path> <priority>
> [--initscript <service>]
> [--slave <link> <name> <path>]*
> alternatives --remove <name> <path>
> alternatives --auto <name>
> alternatives --config <name>
> alternatives --display <name>
> alternatives --set <name> <path>
>
> common options: --verbose --test --help --usage --version
> --altdir <directory> --admindir <directory>
> Traceback (most recent call last):
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
> line 48, in run
> job.run()
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
> line 80, in run
> r = self.method(self.args, **self.kwargs)
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/plugins/mpich2.py",
> line 32, in _update_alternatives
> mpi_choices = node.ssh.execute("update-alternatives --list mpi")
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/sshutils.py",
> line 578, in execute
> msg, command, exit_status, out_str)
> RemoteCommandFailed: remote command 'source /etc/profile &&
> update-alternatives --list mpi' failed with status 2:
> alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
> This may be freely redistributed under the terms of the GNU Public License.
>
> usage: alternatives --install <link> <name> <path> <priority>
> [--initscript <service>]
> [--slave <link> <name> <path>]*
> alternatives --remove <name> <path>
> alternatives --auto <name>
> alternatives --config <name>
> alternatives --display <name>
> alternatives --set <name> <path>
>
> common options: --verbose --test --help --usage --version
> --altdir <directory> --admindir <directory>
>
> error occurred in job (id=node001): remote command 'source /etc/profile &&
> update-alternatives --list mpi' failed with status 2:
> alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
> This may be freely redistributed under the terms of the GNU Public License.
>
> usage: alternatives --install <link> <name> <path> <priority>
> [--initscript <service>]
> [--slave <link> <name> <path>]*
> alternatives --remove <name> <path>
> alternatives --auto <name>
> alternatives --config <name>
> alternatives --display <name>
> alternatives --set <name> <path>
>
> common options: --verbose --test --help --usage --version
> --altdir <directory> --admindir <directory>
> Traceback (most recent call last):
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
> line 48, in run
> job.run()
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/threadpool.py",
> line 80, in run
> r = self.method(self.args, **self.kwargs)
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/plugins/mpich2.py",
> line 32, in _update_alternatives
> mpi_choices = node.ssh.execute("update-alternatives --list mpi")
> File
> "/usr/local/lib/python2.7/dist-packages/StarCluster-0.9999-py2.7.egg/starcluster/sshutils.py",
> line 578, in execute
> msg, command, exit_status, out_str)
> RemoteCommandFailed: remote command 'source /etc/profile &&
> update-alternatives --list mpi' failed with status 2:
> alternatives version 1.3.30.2 - Copyright (C) 2001 Red Hat, Inc.
> This may be freely redistributed under the terms of the GNU Public License.
>
> usage: alternatives --install <link> <name> <path> <priority>
> [--initscript <service>]
> [--slave <link> <name> <path>]*
> alternatives --remove <name> <path>
> alternatives --auto <name>
> alternatives --config <name>
> alternatives --display <name>
> alternatives --set <name> <path>
>
> common options: --verbose --test --help --usage --version
> --altdir <directory> --admindir <directory>
>
>
> !!! ERROR - Oops! Looks like you've found a bug in StarCluster
> !!! ERROR - Crash report written to:
> /home/ubuntu/.starcluster/logs/crash-report-9071.txt
> !!! ERROR - Please remove any sensitive data from the crash report
> !!! ERROR - and submit it to starcluster_at_mit.edu
>
>
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> StarCluster_at_mit.edu
> http://mailman.mit.edu/mailman/listinfo/starcluster
>
>
Received on Wed Dec 11 2013 - 14:15:48 EST