Re: using StarCluster with R and Rmpi

From: Justin Riley <no email>
Date: Tue, 26 Oct 2010 16:54:39 -0400

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On 10/26/2010 03:25 PM, Dan Tenenbaum wrote:
> I am using StarCluster and it works great.

Excellent, glad you like it :D

> way 1:
> R CMD INSTALL Rmpi_0.5-8.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi
>
> way 2:
> wget http://cran.fhcrc.org/src/contrib/Rmpi_0.5-8.tar.gz
> R CMD INSTALL Rmpi_0.5-8.tar.gz --configure-args=--with-mpi=/usr/lib/openmpi
>
> Neither of them work.

OK so it sounds like this *could* be a compile issue although that's
hard to tell without the installation log. Would you mind sending the
output from the installation using the "R CMD INSTALL" method?

I'll try to give this a go in the next few days on a test cluster and
see if I can get it to work

Also, would you mind joining the list?
(http://web.mit.edu/stardev/cluster/mailinglist.html)

Thanks,

~Justin
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Received on Tue Oct 26 2010 - 16:54:42 EDT