Re: [Starcluster] NumPy and SciPy tests fail on Ubuntu 9.10 Karmic

From: Damian Eads <no email>
Date: Fri, 16 Apr 2010 19:23:26 -0400

Hi,

After getting that symbol error, I decided to try install NumPy and
SciPy off of Ubuntu's apt-get and I get failures. Here's the output
when running the NumPy regression tests.

Ran 2022 tests in 3.489s

FAILED (SKIP=11, errors=7)

And the SciPy regression tests,

----------------------------------------------------------------------
Ran 5235 tests in 366.458s

FAILED (SKIP=24, errors=17)

Just thought I'd keep you informed.

Cheers,

Damian



On Fri, Apr 16, 2010 at 7:13 PM, Damian Eads <eads_at_soe.ucsc.edu> wrote:
> Hi Justin,
>
> I decided to run my usual computer vision regressions but before I got
> there, I ran the NumPy and SciPy regression suite.
>
> root_at_domU-12-31-38-01-58-B1:/data# nosetests numpy scipy
> EE
> ======================================================================
> ERROR: Failure: ImportError (/usr/lib/libptcblas.so: undefined symbol:
> ATL_cpttrsm)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File "/usr/local/lib/python2.6/dist-packages/nose/loader.py", line
> 368, in loadTestsFromName
>    module = resolve_name(addr.module)
>  File "/usr/local/lib/python2.6/dist-packages/nose/util.py", line
> 334, in resolve_name
>    module = __import__('.'.join(parts_copy))
>  File "/usr/local/lib/python2.6/dist-packages/numpy/__init__.py",
> line 130, in <module>
>    import add_newdocs
>  File "/usr/local/lib/python2.6/dist-packages/numpy/add_newdocs.py",
> line 9, in <module>
>    from lib import add_newdoc
>  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/__init__.py",
> line 13, in <module>
>    from polynomial import *
>  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/polynomial.py",
> line 18, in <module>
>    from numpy.linalg import eigvals, lstsq
>  File "/usr/local/lib/python2.6/dist-packages/numpy/linalg/__init__.py",
> line 47, in <module>
>    from linalg import *
>  File "/usr/local/lib/python2.6/dist-packages/numpy/linalg/linalg.py",
> line 22, in <module>
>    from numpy.linalg import lapack_lite
> ImportError: /usr/lib/libptcblas.so: undefined symbol: ATL_cpttrsm
>
> ======================================================================
> ERROR: Failure: AttributeError ('module' object has no attribute 'core')
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File "/usr/local/lib/python2.6/dist-packages/nose/loader.py", line
> 368, in loadTestsFromName
>    module = resolve_name(addr.module)
>  File "/usr/local/lib/python2.6/dist-packages/nose/util.py", line
> 334, in resolve_name
>    module = __import__('.'.join(parts_copy))
>  File "/usr/local/lib/python2.6/dist-packages/scipy/__init__.py",
> line 11, in <module>
>    from numpy import show_config as show_numpy_config
>  File "/usr/local/lib/python2.6/dist-packages/numpy/__init__.py",
> line 130, in <module>
>    import add_newdocs
>  File "/usr/local/lib/python2.6/dist-packages/numpy/add_newdocs.py",
> line 9, in <module>
>    from lib import add_newdoc
>  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/__init__.py",
> line 13, in <module>
>    from polynomial import *
>  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/polynomial.py",
> line 11, in <module>
>    import numpy.core.numeric as NX
> AttributeError: 'module' object has no attribute 'core'
>
> ----------------------------------------------------------------------
> Ran 2 tests in 0.001s
>
> FAILED (errors=2)
> root_at_domU-12-31-38-01-58-B1:/data#
>
> Is there a reason for not using the Ubuntu packages for numpy and scipy?
>
> Just curious.
>
> Thanks,
>
> Damian
>
>
>
> -----------------------------------------------------
> Damian Eads                           Ph.D. Candidate
> University of California             Computer Science
> 1156 High Street         Machine Learning Lab, E2-489
> Santa Cruz, CA 95064    http://www.soe.ucsc.edu/~eads
Received on Fri Apr 16 2010 - 19:23:27 EDT