StarCluster - Mailing List Archive

[Starcluster] NumPy and SciPy tests fail on Ubuntu 9.10 Karmic

From: Damian Eads <no email>
Date: Fri, 16 Apr 2010 19:13:08 -0400

Hi Justin,

I decided to run my usual computer vision regressions but before I got
there, I ran the NumPy and SciPy regression suite.

root_at_domU-12-31-38-01-58-B1:/data# nosetests numpy scipy
EE
======================================================================
ERROR: Failure: ImportError (/usr/lib/libptcblas.so: undefined symbol:
ATL_cpttrsm)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.6/dist-packages/nose/loader.py", line
368, in loadTestsFromName
    module = resolve_name(addr.module)
  File "/usr/local/lib/python2.6/dist-packages/nose/util.py", line
334, in resolve_name
    module = __import__('.'.join(parts_copy))
  File "/usr/local/lib/python2.6/dist-packages/numpy/__init__.py",
line 130, in <module>
    import add_newdocs
  File "/usr/local/lib/python2.6/dist-packages/numpy/add_newdocs.py",
line 9, in <module>
    from lib import add_newdoc
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/__init__.py",
line 13, in <module>
    from polynomial import *
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/polynomial.py",
line 18, in <module>
    from numpy.linalg import eigvals, lstsq
  File "/usr/local/lib/python2.6/dist-packages/numpy/linalg/__init__.py",
line 47, in <module>
    from linalg import *
  File "/usr/local/lib/python2.6/dist-packages/numpy/linalg/linalg.py",
line 22, in <module>
    from numpy.linalg import lapack_lite
ImportError: /usr/lib/libptcblas.so: undefined symbol: ATL_cpttrsm

======================================================================
ERROR: Failure: AttributeError ('module' object has no attribute 'core')
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.6/dist-packages/nose/loader.py", line
368, in loadTestsFromName
    module = resolve_name(addr.module)
  File "/usr/local/lib/python2.6/dist-packages/nose/util.py", line
334, in resolve_name
    module = __import__('.'.join(parts_copy))
  File "/usr/local/lib/python2.6/dist-packages/scipy/__init__.py",
line 11, in <module>
    from numpy import show_config as show_numpy_config
  File "/usr/local/lib/python2.6/dist-packages/numpy/__init__.py",
line 130, in <module>
    import add_newdocs
  File "/usr/local/lib/python2.6/dist-packages/numpy/add_newdocs.py",
line 9, in <module>
    from lib import add_newdoc
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/__init__.py",
line 13, in <module>
    from polynomial import *
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/polynomial.py",
line 11, in <module>
    import numpy.core.numeric as NX
AttributeError: 'module' object has no attribute 'core'

----------------------------------------------------------------------
Ran 2 tests in 0.001s

FAILED (errors=2)
root_at_domU-12-31-38-01-58-B1:/data#

Is there a reason for not using the Ubuntu packages for numpy and scipy?

Just curious.

Thanks,

Damian



-----------------------------------------------------
Damian Eads Ph.D. Candidate
University of California Computer Science
1156 High Street Machine Learning Lab, E2-489
Santa Cruz, CA 95064 http://www.soe.ucsc.edu/~eads
Received on Fri Apr 16 2010 - 19:13:09 EDT
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