SGE Execution errors - Ubuntu 12.04 Official

From: Stephen Smith <no email>
Date: Mon, 17 Nov 2014 14:06:41 -0500

Hello,

I'm getting the following errors when submitting a job to SGE via qsub.
I'm running the 12.04 Ubuntu starcluster AMI, modified only with the
installation of the software I would like to run. I received these same
errors with a CentOS7 AMI I built from scratch as well - I'm not sure what
I'm missing. Any thoughts as to the cause?

/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 11:
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/starenv: No
such file or directory
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 24:
reset_env: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 28:
init_timers: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 29:
start_finetimer: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 33:
stop_timer: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 39:
remove_doublequotes: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 81:
start_timer: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found
/opt/sge6/default/spool/exec_spool_local/node001/job_scripts/1: line 93:
substitute_spaceescape: command not found


Thanks in advance,
Stephen

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Received on Mon Nov 17 2014 - 14:06:45 EST