StarCluster - Mailing List Archive

Re: Unable to mount ebs volume

From: Steve Darnell <no email>
Date: Wed, 1 May 2013 16:06:37 +0000

Hi Jerry,

Have you taken efforts to ensure that your cluster is started in the same availability zone as your EBS volume?

~Steve

From: starcluster-bounces_at_mit.edu [mailto:starcluster-bounces_at_mit.edu] On Behalf Of Jerry Lee, GW/US
Sent: Monday, April 15, 2013 5:12 PM
To: starcluster_at_mit.edu
Subject: [StarCluster] Unable to mount ebs volume

Hi,

I am a beginner of using the StarCluster. I created a ebs volme via Amazon AWS and configure it on the config file to use it for my cluster, but no matter what I do, it doesn't automatically mount the ebs volume onto the cluster. Please help.

[cluster jerrycluster]
EXTENDS = smallcluster
VOLUMES = testdata

[volume testdata]
VOLUME_ID=vol-a0fe24f9
MOUNT_PATH=/data

>>> Waiting for cluster to come up... (updating every 30s)
>>> Waiting for instances to activate...
>>> Waiting for all nodes to be in a 'running' state...
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Waiting for SSH to come up on all nodes...
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Waiting for cluster to come up took 1.847 mins
>>> The master node is ec2-54-234-229-206.compute-1.amazonaws.com
>>> Setting up the cluster...
>>> Configuring hostnames...
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Creating cluster user: None (uid: 1001, gid: 1001)
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Configuring scratch space for user(s): sgeadmin
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Configuring /etc/hosts on each node
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Starting NFS server on master
>>> Configuring NFS exports path(s):
/home
>>> Mounting all NFS export path(s) on 1 worker node(s)
1/1 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Setting up NFS took 0.073 mins
>>> Configuring passwordless ssh for root
>>> Configuring passwordless ssh for sgeadmin
>>> Shutting down threads...
20/20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Configuring SGE...
>>> Configuring NFS exports path(s):
/opt/sge6
>>> Mounting all NFS export path(s) on 1 worker node(s)
1/1 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Setting up NFS took 0.020 mins
>>> Installing Sun Grid Engine...
1/1 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Creating SGE parallel environment 'orte'
2/2 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Adding parallel environment 'orte' to queue 'all.q'
>>> Shutting down threads...
20/20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 100%
>>> Configuring cluster took 1.325 mins
>>> Starting cluster took 3.197 mins


Thanks,

Jerry Lee

Jerry Lee
Assistant Manager of Global Infrastructure
GENEWIZ Inc.
40 Cragwood Road. Suite 201
South Plainfield, NJ 07080
Phone: 908-222-0711 ext. 3379
Fax: 908-333-4511
jerry.lee_at_genewiz.com<mailto:jerry.lee_at_genewiz.com>
www.genewiz.com<http://www.genewiz.com/>

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Received on Wed May 01 2013 - 12:06:43 EDT
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