Re: [Starcluster] upgrading AMI breaks SGE

From: Mark J. Pearrow <no email>
Date: Fri, 8 Jan 2010 08:33:12 -0500

To be a bit more specific, after I aptitude safe-upgrade a stock ami-0f30d166, SGE is still running just fine until I either reboot the system or build a new AMI from it and launch an instance with it.

The starcluster -s script sits there for a while when it ought to be setting up SGE, but never appears to do so successfully. Then, when I log in to that instance, none of the sge_* binaries are running. If I start qmaster manually, I can attempt, at least, to submit a job, but the the error that localhost "is no submit host" (how snarky :) )

I'll see if the system logfiles are helpful at all.

mjp



On Jan 7, 2010, at 1:22 PM, Mark J. Pearrow wrote:
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>
> I've been pulling my hair out trying to create a customized AMI with our neuroimaging softwware on it. It appears that running aptitude safe-upgrade on the AMI upgrades several sun-java packages, which appears to break SGE completely. Has anyone else had this problem?
>
Received on Fri Jan 08 2010 - 08:33:13 EST