Re: StarGenetics issues

From: Arman Eshaghi <no email>
Date: Wed, 14 Jul 2021 16:27:09 +0100

StarCluster was a decade ahead of its time in 2010. But is it still
relevant with AWS batch?

Arman

On Wed, Jul 14, 2021 at 4:00 PM Ramon Ramirez-Linan <rlinan_at_navteca.com>
wrote:

> That is a great use Ed.
> We use Pcluster at everage Spot Instances too, from earth science to space
> science
>
> Ramon
>
> On Wed, Jul 14, 2021 at 10:15 AM Ed Gray <gray_ed_at_hotmail.com> wrote:
>
>> We used StarCluster to leverage spot instance pricing for
>> bioinformatics. Many compute years over a weekend to chug through 40000
>> genes over 10 species.
>>
>>
>> -------- Original message --------
>> From: Ramon Ramirez-Linan <rlinan_at_navteca.com>
>> Date: 7/14/21 8:01 AM (GMT-06:00)
>> To: Ed Gray <gray_ed_at_hotmail.com>
>> Cc: Ryan G <ngsbioinformatics_at_gmail.com>, "Marcey, David" <
>> marcey_at_callutheran.edu>, starcluster_at_mit.edu
>> Subject: Re: [StarCluster] StarGenetics issues
>>
>> I was an active user of StarCluster for HPC on the agency I work for, but
>> since AWS launched Pcluster I dont see the point and have switched to this
>> other tool.
>>
>> Ramon
>>
>> On Tue, Jul 13, 2021 at 6:47 PM Ed Gray <gray_ed_at_hotmail.com> wrote:
>>
>>> oh man, finally a StarCluster group email and its unrelated.
>>>
>>> wow.
>>>
>>> oh how the mighty have fallen.
>>>
>>>
>>> -------- Original message --------
>>> From: Ryan G <ngsbioinformatics_at_gmail.com>
>>> Date: 7/13/21 5:40 PM (GMT-06:00)
>>> To: "Marcey, David" <marcey_at_callutheran.edu>
>>> Cc: starcluster_at_mit.edu
>>> Subject: Re: [StarCluster] StarGenetics issues
>>>
>>> To my knowledge, that tool is not related to starcluster.
>>>
>>> Please excuse any typos -- Sent from my iPad
>>>
>>> On Jul 13, 2021, at 3:24 PM, Marcey, David <marcey_at_callutheran.edu>
>>> wrote:
>>>
>>> 
>>>
>>> I’m using the Star Genetics Instructor page to create new SG problems (
>>> http://star-genetics-instructor.surge.sh/).
>>>
>>>
>>>
>>> The encrypt and save does not work for me if I use genes on different
>>> chromosomes. Firefox or Chrome browser.
>>>
>>>
>>>
>>> I can encrypt and save if multiple genes are on different chromosomes.
>>>
>>>
>>>
>>> However, I am getting anomalous results in simple dihybrid crosses with
>>> unlinked genes.
>>>
>>>
>>>
>>> Any advice would be most appreciated!
>>>
>>>
>>>
>>> David Marcey
>>>
>>>
>>>
>>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>
>>> David J. Marcey
>>>
>>> Fletcher Jones Professor of Developmental Biology
>>>
>>> The Center for Active Learning
>>>
>>> California Lutheran University
>>>
>>> 60 West Olsen Road., MC#3700
>>>
>>> Thousand Oaks, CA 91360
>>>
>>> marcey_at_callutheran.edu
>>>
>>>
>>>
>>> *he/him/his*
>>>
>>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>> _______________________________________________
>>> StarCluster mailing list
>>> StarCluster_at_mit.edu
>>> http://mailman.mit.edu/mailman/listinfo/starcluster
>>>
>>> _______________________________________________
>>> StarCluster mailing list
>>> StarCluster_at_mit.edu
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>>>
>>
>>
>> --
>>
>> Ramon Ramirez-Linan |
>> * Navteca | C: 301.789.9139 | * _at_ramonlinan
>> <https://twitter.com/RamonLinan>
>> Emerging Technology, Innovation Solutions
>> (NAICS Codes - 518210, 541511, 541512, 541519, 541990)
>> *Co-founder*
>>
>> www.navteca.com | _at_Navteca <https://twitter.com/Navteca>
>>
>>
>>
>>
>>
>>
>> www.navteca.com | _at_Navteca <https://twitter.com/Navteca>
>>
>
>
> --
>
> Ramon Ramirez-Linan |
> *Navteca | C: 301.789.9139 | * _at_ramonlinan
> <https://twitter.com/RamonLinan>
> Emerging Technology, Innovation Solutions
> (NAICS Codes - 518210, 541511, 541512, 541519, 541990)
> *Co-founder*
>
> www.navteca.com | _at_Navteca <https://twitter.com/Navteca>
>
>
>
>
>
>
> www.navteca.com | _at_Navteca <https://twitter.com/Navteca>
> _______________________________________________
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> StarCluster_at_mit.edu
> http://mailman.mit.edu/mailman/listinfo/starcluster
>

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Received on Wed Jul 14 2021 - 11:27:30 EDT