We used StarCluster to leverage spot instance pricing for bioinformatics. Many compute years over a weekend to chug through 40000 genes over 10 species.
-------- Original message --------
From: Ramon Ramirez-Linan <rlinan_at_navteca.com>
Date: 7/14/21 8:01 AM (GMT-06:00)
To: Ed Gray <gray_ed_at_hotmail.com>
Cc: Ryan G <ngsbioinformatics_at_gmail.com>, "Marcey, David" <marcey_at_callutheran.edu>, starcluster_at_mit.edu
Subject: Re: [StarCluster] StarGenetics issues
I was an active user of StarCluster for HPC on the agency I work for, but since AWS launched Pcluster I dont see the point and have switched to this other tool.
Ramon
On Tue, Jul 13, 2021 at 6:47 PM Ed Gray <gray_ed_at_hotmail.com<mailto:gray_ed_at_hotmail.com>> wrote:
oh man, finally a StarCluster group email and its unrelated.
wow.
oh how the mighty have fallen.
-------- Original message --------
From: Ryan G <ngsbioinformatics_at_gmail.com<mailto:ngsbioinformatics_at_gmail.com>>
Date: 7/13/21 5:40 PM (GMT-06:00)
To: "Marcey, David" <marcey_at_callutheran.edu<mailto:marcey_at_callutheran.edu>>
Cc: starcluster_at_mit.edu<mailto:starcluster_at_mit.edu>
Subject: Re: [StarCluster] StarGenetics issues
To my knowledge, that tool is not related to starcluster.
Please excuse any typos -- Sent from my iPad
On Jul 13, 2021, at 3:24 PM, Marcey, David <marcey_at_callutheran.edu<mailto:marcey_at_callutheran.edu>> wrote:
I’m using the Star Genetics Instructor page to create new SG problems (
http://star-genetics-instructor.surge.sh/).
The encrypt and save does not work for me if I use genes on different chromosomes. Firefox or Chrome browser.
I can encrypt and save if multiple genes are on different chromosomes.
However, I am getting anomalous results in simple dihybrid crosses with unlinked genes.
Any advice would be most appreciated!
David Marcey
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
David J. Marcey
Fletcher Jones Professor of Developmental Biology
The Center for Active Learning
California Lutheran University
60 West Olsen Road., MC#3700
Thousand Oaks, CA 91360
marcey_at_callutheran.edu<mailto:marcey_at_callutheran.edu>
he/him/his
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Ramon Ramirez-Linan |
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Received on Wed Jul 14 2021 - 10:15:28 EDT