Re: libgmp issue with StarCluster 0.9.3 on Ubuntu 10.04
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My bad, I didn't read your message closely enough - you claimed to have
already installed libgmp. How did you install libgmp 5.0.2? Manually
from source, or from some deb package you downloaded?
Most likely reinstalling StarCluster did not trigger a rebuild of
pycrypto. Try manually deleting pycrypto from your site-packages
directory and then reinstall StarCluster.
If that still doesn't fix things then pycrypto is likely not detecting
your new libgmp install in which case you should probably post a
question to their mailing list with details about how you installed
libgmp and the build output when running 'python setup.py install' from
pycrypto's source directory.
On Sun Jan 15 14:15:12 2012, Justin Riley wrote:
> This warning comes from PyCrypto and the fix is to install libgmp 5.x
> and then reinstall pycrypto.
> Unfortunately it looks like in Ubuntu 10.04 (Lucid) the libgmp version
> is 4.3.2. You could either try installing libgmp 5.x manually either
> by building from source or downloading a deb from some where or you
> might consider upgrading to Ubuntu 11.10 (Oneiric) which has libgmp
> 5.x. It *might* be possible to simply download the latest libgmp debs
> from Oneiric and install using dpkg....
> On 1/14/12 1:54 PM, Wei Tao wrote:
>> Hi all,
>> For StarCluster v0.9.3, after I installed gmp-5.0.2 on Ubuntu 10.04,
>> adn rebuild StarCluster, I still get the following warning when I run
>> ubuntu_at_ip-10-83-81-254:~$ starcluster --help
>> PowmInsecureWarning: Not using mpz_powm_sec. You should rebuild
>> using libgmp >= 5 to avoid timing attack vulnerability.
>> _warn("Not using mpz_powm_sec. You should rebuild using libgmp >=
>> 5 to avoid timing attack vulnerability.", PowmInsecureWarning)
>> StarCluster - (http://web.mit.edu/starcluster) (v. 0.93)
>> What else should I do to get rid off the warning message?
>> Wei Tao, Ph.D.
>> TSI Biocomputing LLC
>> StarCluster mailing list
Received on Sun Jan 15 2012 - 14:23:04 EST