I already did that. ;)
Now I'm getting another error:
In [1]: cluster.run_plugin("shortreadplugin","myfirstcluster",cfg)
>>> Using private key /Users/dante/.ec2/bioc-keypair.pem.rsa (rsa)
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/Library/Python/2.6/site-packages/StarCluster-0.91-py2.6.egg/starcluster/cli.pyc
in <module>()
----> 1
2
3
4
5
/Library/Python/2.6/site-packages/StarCluster-0.91-py2.6.egg/starcluster/cluster.pyc
in run_plugin(plugin_name, cluster_tag, cfg)
175 plugins = {}
176 plugins[plugin_name] = plug
--> 177 plugins = cl.load_plugins(plugins)
178 master = cl.master_node
179 for p in plugins:
/Library/Python/2.6/site-packages/StarCluster-0.91-py2.6.egg/starcluster/cluster.pyc
in load_plugins(self, plugins)
314 plugs = []
315 for plugin in plugins:
--> 316 setup_class = plugin.get('setup_class')
317 plugin_name = plugin.get('__name__')
318 mod_name = '.'.join(setup_class.split('.')[:-1])
AttributeError: 'str' object has no attribute 'get'
Hmm....
Dan
On Sat, Oct 30, 2010 at 11:27 AM, Marc Resnick <mresnick_at_mit.edu> wrote:
> Yes, that's the bug I told Justin about this Summer... I think I
> patched it, but he may have forgotten to pull from my fork.
>
> You can fix it by editing the run_plugin method, and replacing
>
> cl = get_cluster(cluster_tag)
>
> with
>
> cl = get_cluster(cluster_tag, cfg)
>
>
>
> Marc
>
>
> On Sat, Oct 30, 2010 at 2:20 PM, Dan Tenenbaum <dtenenba_at_fhcrc.org> wrote:
> > Hi Marc,
> > I am running 0.91.
> > I was doing a couple things wrong. I figured them out but I am still
> having
> > this problem.
> > One thing I did wrong was have the
> > plugins=shortreadplugin
> > line under the global section; it needed to be under the
> > [cluster smallcluster]
> > section.
> > When I start the cluster now, I can see the output from my plugin:
> >>>> Running plugin shortreadplugin
> >>>> about to echo
> > But, when I run the shell and put in this command:
> > cluster.run_plugin("shortreadplugin","myfirstcluster",cfg)
> > I get the same error described below.
> > Dan
> >
> > On Sat, Oct 30, 2010 at 11:11 AM, Marc Resnick <mresnick_at_mit.edu> wrote:
> >>
> >> Hey Dan,
> >>
> >> Are you running the latest version? I saw that bug a few months ago, I
> >> thought I remember Justin fixing it.
> >>
> >>
> >> Marc
> >>
> >> On Sat, Oct 30, 2010 at 2:00 PM, Dan Tenenbaum <dtenenba_at_fhcrc.org>
> wrote:
> >> > Hi,
> >> > I am not much of a python programmer and I'm trying to figure out the
> >> > plugin
> >> > system.
> >> > I created a ~/.starcluster/plugins directory and put a file in it
> called
> >> > shortread.py.
> >> > Here are its contents:
> >> >
> >> > from starcluster.clustersetup import ClusterSetup
> >> > from starcluster.logger import log
> >> > class ShortReadPlugin(ClusterSetup):
> >> > def __init__(self, arg1):
> >> > self.arg1 = arg1
> >> > log.info('arg1 = %s' % arg1)
> >> > def run(self, nodes, master, user, user_shell, volumes):
> >> > log.info("about to echo")
> >> > master.ssh.execute("echo 'hey'")
> >> > As you can see, it's just a test.
> >> > In my config, I put this at the bottom:
> >> > [plugin shortreadplugin]
> >> > SETUP_CLASS = ShortReadPlugin
> >> > arg1=foo
> >> > And above in the [global] section I put:
> >> > plugins=shortreadplugin
> >> > I'm a bit confused about whether this is right because in your
> example:
> >> > http://web.mit.edu/stardev/cluster/docs/plugins.html
> >> > ...you have the SETUP_CLASS as ubuntu.PackageInstaller. I'm not sure
> >> > where
> >> > the "ubuntu" fits into this. Is it like java where I need to have a
> >> > folder
> >> > called ubuntu where the class resides?
> >> > Anyway, I fired up my cluster and went to test this with "starcluster
> >> > shell"
> >> > and got the following output:
> >> > In [5]: cluster.run_plugin('shortreadplugin', 'myfirstcluster', cfg)
> >> >
> >> >
> ---------------------------------------------------------------------------
> >> > TypeError Traceback (most recent call
> >> > last)
> >> >
> >> >
> /Library/Python/2.6/site-packages/StarCluster-0.91-py2.6.egg/starcluster/cli.pyc
> >> > in <module>()
> >> > ----> 1
> >> > 2
> >> > 3
> >> > 4
> >> > 5
> >> >
> >> >
> /Library/Python/2.6/site-packages/StarCluster-0.91-py2.6.egg/starcluster/cluster.pyc
> >> > in run_plugin(plugin_name, cluster_tag, cfg)
> >> > 170 def run_plugin(plugin_name, cluster_tag, cfg):
> >> > 171 ec2 = cfg.get_easy_ec2()
> >> > --> 172 cl = get_cluster(cluster_tag)
> >> > 173 cl.load_receipt()
> >> > 174 plug = cfg.get_plugin(plugin_name)
> >> > TypeError: get_cluster() takes exactly 2 arguments (1 given)
> >> >
> >> > It's hard for me to understand what's happening here. I of course am
> not
> >> > calling get_cluster directly. Is there a bug in run_plugin() or is
> there
> >> > something wrong in my setup, or both?
> >> > Thanks
> >> > Dan
> >> >
> >> > _______________________________________________
> >> > StarCluster mailing list
> >> > StarCluster_at_mit.edu
> >> > http://mailman.mit.edu/mailman/listinfo/starcluster
> >> >
> >> >
> >>
> >
> >
>
>
Received on Sat Oct 30 2010 - 14:31:22 EDT